Hamid Pezeshk : rechercher sur Z-Library

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1

Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks

Sayed-Amir Marashi, Hani Goodarzi, Mehdi Sadeghi, Changiz Eslahchi, Hamid Pezeshk

Journal:

Computational Biology and Chemistry

Année:

2006

Langue:

english

Fichier:

PDF, 525 KB

english, 2006

2

Spatial Distribution of Fractures in the Asmari Formation of Iran in Subsurface Environment: Effect of Lithology and Petrophysical Properties

Masoud Nemati, Hamid Pezeshk

Journal:

Natural Resources Research

Année:

2005

Langue:

english

Fichier:

PDF, 5.50 MB

english, 2005

3

Optimizing aeration rates for minimizing membrane fouling and its effect on sludge characteristics in a moving bed membrane bioreactor

Yousef Rahimi, Ali Torabian, Naser Mehrdadi, Mehran Habibi-Rezaie, Hamid Pezeshk, Gholam-Reza Nabi-Bidhendi

Journal:

Journal of Hazardous Materials

Année:

2011

Langue:

english

Fichier:

PDF, 616 KB

english, 2011

4

SSP: An interval integer linear programming for de novo transcriptome assembly and isoform discovery of RNA-seq reads

Safikhani, Zhaleh, Sadeghi, Mehdi, Pezeshk, Hamid, Eslahchi, Changiz

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 758 KB

english, 2013

5

Denoising of genetic switches based on Parrondo’s paradox

Fotoohinasab, Atiyeh, Fatemizadeh, Emad, Pezeshk, Hamid, Sadeghi, Mehdi

Journal:

Physica A: Statistical Mechanics and its Applications

Année:

2018

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2018

6

PROSIGN: A method for protein secondary structure assignment based on three-dimensional coordinates of consecutive Cα atoms

Sayed-Rzgar Hosseini, Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, Mahnaz Habibi

Journal:

Computational Biology and Chemistry

Année:

2008

Langue:

english

Fichier:

PDF, 584 KB

english, 2008

7

STON: A novel method for protein three-dimensional structure comparison

Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi, Amir Massoud Rahimi, Heydar Maboudi Afkham, Shahriar Arab

Journal:

Computers in Biology and Medicine

Année:

2009

Langue:

english

Fichier:

PDF, 369 KB

english, 2009

8

The performances of the chi-square test and complexity measures for signal recognition in biological sequences

Leila Pirhaji, Mehdi Kargar, Armita Sheari, Hadi Poormohammadi, Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi

Journal:

Journal of Theoretical Biology

Année:

2008

Langue:

english

Fichier:

PDF, 306 KB

english, 2008

9

A distance-dependent atomic knowledge-based potential and force for discrimination of native structures from decoys

Mehdi Mirzaie, Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 199 KB

english, 2009

10

A Bayesian cost–benefit approach to the determination of sample size in clinical trials

Takashi Kikuchi, Hamid Pezeshk, John Gittins

Journal:

Statistics in Medicine

Année:

2008

Langue:

english

Fichier:

PDF, 302 KB

english, 2008

11

Adaptation of proteins to different environments: A comparison of proteome structural properties in Bacillus subtilis and Escherichia coli

Sayed-Amir Marashi, Reza Behrouzi, Hamid Pezeshk

Journal:

Journal of Theoretical Biology

Année:

2007

Langue:

english

Fichier:

PDF, 247 KB

english, 2007

12

How Large Should a Clinical Trial Be?

John Gittins, Hamid Pezeshk

Journal:

Journal of the Royal Statistical Society: Series D (The Statistician)

Année:

2000

Langue:

english

Fichier:

PDF, 244 KB

english, 2000

13

The influence of deposit control additives on exhaust CO and HC emissions from gasoline engines (case study: Tehran)

Ali Daryabeigi Zand, Gholamreza Nabi bidhendi, Alireza Mikaeili T., Hamid Pezeshk

Journal:

Transportation Research Part D: Transport and Environment

Année:

2007

Langue:

english

Fichier:

PDF, 108 KB

english, 2007

14

Global haplotype partitioning for maximal associated SNP pairs

Ali Katanforoush, Mehdi Sadeghi, Hamid Pezeshk, Elahe Elahi

Journal:

BMC Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 489 KB

english, 2009

15

A pairwise residue contact area-based mean force potential for discrimination of native protein structure

Shahriar Arab, Mehdi Sadeghi, Changiz Eslahchi, Hamid Pezeshk, Armita Sheari

Journal:

BMC Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 413 KB

english, 2010

16

Impact of RNA structure on the prediction of donor and acceptor splice sites

Sayed-Amir Marashi, Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 272 KB

english, 2006

17

A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins

Armita Sheari, Mehdi Kargar, Ali Katanforoush, Shahriar Arab, Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, Sayed-Amir Marashi

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 551 KB

english, 2008

18

Impact of residue accessible surface area on the prediction of protein secondary structures

Amir Momen-Roknabadi, Mehdi Sadeghi, Hamid Pezeshk, Sayed-Amir Marashi

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 338 KB

english, 2008

19

β-Sheet capping: Signals that initiate and terminate β-sheet formation

Fahim FarzadFard, Nava Gharaei, Hamid Pezeshk, Sayed-Amir Marashi

Journal:

Journal of Structural Biology

Année:

2008

Langue:

english

Fichier:

PDF, 634 KB

english, 2008

20

Protein secondary structure prediction using three neural networks and a segmental semi Markov model

Seyed Amir Malekpour, Sima Naghizadeh, Hamid Pezeshk, Mehdi Sadeghi, Changiz Eslahchi

Journal:

Mathematical Biosciences

Année:

2009

Langue:

english

Fichier:

PDF, 225 KB

english, 2009

21

A Segmental Semi Markov Model for protein secondary structure prediction

Seyed Amir Malekpour, Sima Naghizadeh, Hamid Pezeshk, Mehdi Sadeghi, Changiz Eslahchi

Journal:

Mathematical Biosciences

Année:

2009

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2009

22

Constructing circular phylogenetic networks from weighted quartets using simulated annealing

Changiz Eslahchi, Reza Hassanzadeh, Ehsan Mottaghi, Mahnaz Habibi, Hamid Pezeshk, Mehdi Sadeghi

Journal:

Mathematical Biosciences

Année:

2012

Langue:

english

Fichier:

PDF, 338 KB

english, 2012

23

Bayesian techniques for sample size determination in clinical trials: a short review

Journal:

Statistical Methods in Medical Research

Année:

2003

Langue:

english

Fichier:

PDF, 254 KB

english, 2003

24

ProDomAs, protein domain assignment algorithm using center-based clustering and independent dominating set

Ansari, Elnaz Saberi, Eslahchi, Changiz, Pezeshk, Hamid, Sadeghi, Mehdi

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2014

Langue:

english

Fichier:

PDF, 544 KB

english, 2014

25

[IEEE 2010 2nd International Conference on Advanced Computer Control (ICACC 2010) - Shenyang (2010.3.27-2010.3.29)] 2010 2nd International Conference on Advanced Computer Control - A modified bidirectional hidden Markov model and its application in protein secondary structure prediction

Pezeshk, Hamid, Naghizadeh, S, Malekpour, S A, Eslahchi, C, Sadeghi, M

Année:

2010

Langue:

english

Fichier:

PDF, 411 KB

english, 2010

26

An Optimization Approach to Calculating Sample Sizes With Binary Responses

Maroufy, Vahed, Marriott, Paul, Pezeshk, Hamid

Journal:

Journal of Biopharmaceutical Statistics

Année:

2014

Langue:

english

Fichier:

PDF, 2.75 MB

english, 2014

27

[AIP Numerical Analysis and Applied Mathematics - Corfu, Greece (16-20 September 2007)] AIP Conference Proceedings - Haplotyping Problem, A Clustering Approach

Eslahchi, Changiz, Sadeghi, Mehdi, Pezeshk, Hamid, Kargar, Mehdi, Poormohammadi, Hadi, Simos, Theodore E., Psihoyios, George, Tsitouras, Ch.

Année:

2007

Langue:

english

Fichier:

PDF, 552 KB

english, 2007

28

Increased robustness of early embryogenesis through collective decision-making by key transcription factors

Sharifi-Zarchi, Ali, Totonchi, Mehdi, Khaloughi, Keynoush, Karamzadeh, Razieh, Araúzo-Bravo, Marcos J., Baharvand, Hossein, Tusserkani, Ruzbeh, Pezeshk, Hamid, Chitsaz, Hamidreza, Sadeghi, Mehdi

Journal:

BMC Systems Biology

Année:

2015

Langue:

english

Fichier:

PDF, 2.29 MB

english, 2015

29

A clustering approach for estimating parameters of a profile hidden Markov model

Aghdam, Rosa, Pezeshk, Hamid, Malekpour, Seyed Amir, Shemehsavar, Soudabeh, Eslahchi, Changiz

Journal:

International Journal of Data Mining and Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 825 KB

english, 2013

30

Optimization of Electrospinning Parameters for PAN-MgO Nanofibers Applied in Air Filtration

Farhang Dehghan, Somayeh, Golbabaei, Farideh, Maddah, Bozorgmehr, Latifi, Masoud, Pezeshk, Hamid, Hasanzadeh, Mahdi, Akbar-Khanzadeh, Farhang

Journal:

Journal of the Air & Waste Management Association (1995-)

Année:

2016

Langue:

english

Fichier:

PDF, 16.65 MB

english, 2016

31

MGP-HMM: Detecting genome-wide CNVs using an HMM for modeling mate pair insertion sizes and read counts

Malekpour, Seyed Amir, Pezeshk, Hamid, Sadeghi, Mehdi

Journal:

Mathematical Biosciences

Année:

2016

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2016

32

How Large Should a Clinical Trial Be?

John Gittins and Hamid Pezeshk

Journal:

Journal of the Royal Statistical Society: Series D (The Statistician)

Année:

2000

Langue:

english

Fichier:

PDF, 869 KB

english, 2000

33

PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities

Malekpour, Seyed Amir, Pezeshk, Hamid, Sadeghi, Mehdi

Journal:

BMC Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 791 KB

english, 2016

34

Task modulates functional connectivity networks in free viewing behavior

Seidkhani, Hossein, Nikolaev, Andrey R., Meghanathan, Radha Nila, Pezeshk, Hamid, Masoudi-Nejad, Ali, van Leeuwen, Cees

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.94 MB

english, 2017

35

MSeq-CNV: accurate detection of Copy Number Variation from Sequencing of Multiple samples

Malekpour, Seyed Amir, Pezeshk, Hamid, Sadeghi, Mehdi

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 1.57 MB

english, 2018

36

F-MAP: A Bayesian approach to infer the gene regulatory network using external hints

Shahdoust, Maryam, Pezeshk, Hamid, Mahjub, Hossein, Sadeghi, Mehdi, Kaderali, Lars

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 4.93 MB

english, 2017

37

Protein Complex Discovery by Interaction Filtering from Protein Interaction Networks Using Mutual Rank Coexpression and Sequence Similarity

Kazemi-Pour, Ali, Goliaei, Bahram, Pezeshk, Hamid

Journal:

BioMed Research International

Année:

2015

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2015

38

Some node ordering methods for the K2 algorithm

Aghdam, Rosa, Rezaei Tabar, Vahid, Pezeshk, Hamid

Journal:

Computational Intelligence

Année:

2018

Langue:

english

Fichier:

PDF, 1006 KB

english, 2018

39

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism

Sharifi-Zarchi, Ali, Gerovska, Daniela, Adachi, Kenjiro, Totonchi, Mehdi, Pezeshk, Hamid, Taft, Ryan J., Schöler, Hans R., Chitsaz, Hamidreza, Sadeghi, Mehdi, Baharvand, Hossein, Araúzo-Bravo, Marcos

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.21 MB

english, 2017

40

A parametric empirical Bayes (PEB) approach for estimating maize progress percentage at field scale

Ghamghami, Mahdi, Ghahreman, Nozar, Irannejad, Parviz, Pezeshk, Hamid

Journal:

Agricultural and Forest Meteorology

Année:

2020

Langue:

english

Fichier:

PDF, 1.99 MB

english, 2020

41

A Cost-Benefit Approach to the Amount of Experimentation in Clinical Trials

Pezeshk, Hamid, Gittins, John

Journal:

Drug Information Journal

Année:

2006

Langue:

english

Fichier:

PDF, 643 KB

english, 2006

42

A Cost-Benefit Approach to the Amount of Experimentation in Clinical Trials

Pezeshk, Hamid, Gittins, John

Journal:

Drug Information Journal

Année:

2006

Fichier:

PDF, 643 KB

2006

43

Inter-protein residue covariation information unravels physically interacting protein dimers

Salmanian, Sara, Pezeshk, Hamid, Sadeghi, Mehdi

Journal:

BMC Bioinformatics

Année:

2020

Fichier:

PDF, 1.74 MB

2020